PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 556aa    MW: 61355.5 Da    PI: 5.238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-11219242427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e C +++++G Ck+G +CkF+H+p
  XP_011072924.1 219 EDCAYYMKFGSCKFGLNCKFNHPP 242
                     89********************96 PP

2zf-CCCH26.51.1e-08265288326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C++++ +G C+yG  C+++Hg
  XP_011072924.1 265 QTECKYYLTSGGCRYGKDCNYSHG 288
                     679********************8 PP

3zf-CCCH413.1e-13310335227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rtG CkyG++C+F+H++
  XP_011072924.1 310 GEKECPYYMRTGSCKYGANCRFHHPE 335
                     7899********************96 PP

4zf-CCCH28.23.2e-09446472127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C ff++tG Ck+ ++CkF+H++
  XP_011072924.1 446 PGEPECTFFLKTGDCKFKSNCKFHHPK 472
                     5799*********************96 PP

5zf-CCCH32.61.4e-10495519226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C +++r+G+Ck+G+ Ck+ H+
  XP_011072924.1 495 DQPICTHYHRYGICKFGPACKYDHP 519
                     689*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-5214243IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633215243IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-9219242IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84262290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6264291IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6265288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5268289IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.502308336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7310336IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-11310335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6314334IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4445472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249445473IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6447472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5449473IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4493520IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131493521IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-8495519IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5495520IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAESPVSSST SDKPPIEKQG LGLLISHTPP SDPITSDQDI KFQPSSCSSQ NASDAGNASP  60
TEGAADGVLK EIGTAFQEEE LGNSIQRELL QLTVVQAEIE AVCEKLEAIH VTEARSDVEV  120
VKKDIDEEKD GKDAEPVDKE NEGGEDRNDA RMTKSDHIDE DKDDKDAESV EEENQNEEGD  180
DEDEGNVDGQ SGQAVTMLGR HNNSNHRRRT NYPMRPDAED CAYYMKFGSC KFGLNCKFNH  240
PPRRKNQGVK EKAMNREENF EKTGQTECKY YLTSGGCRYG KDCNYSHGSD KSSTSHIPEY  300
NFLGLPIRPG EKECPYYMRT GSCKYGANCR FHHPEPKTVA GGGSPSGYGN DRSLPSQVVS  360
SSSLSPWSAS GAFTSTSPFV PVIYPPTQGA PRPNPEWNGY QGTAYPTSER SLPTPPAFAM  420
NNLPTEINFP SQHQHDMAVQ EHPERPGEPE CTFFLKTGDC KFKSNCKFHH PKNRNPKPKA  480
NTFALNDKGL PLRPDQPICT HYHRYGICKF GPACKYDHPS KFAVLPLPFD KPPLGNLKIV  540
DEAEKSGHGN ETESSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072924.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLA0A022RK450.0A0A022RK45_ERYGU; Uncharacterized protein
STRINGSolyc03g111580.2.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-115C3H family protein